I made a bug report about this bug already here:
I also pointed out: If a design decision is based on the case of an exception (user mistakenly deletes font from collection), still the number of fonts FontBase shows is wrong after deleting a font from a collection. And this should be corrected.
As a followup question for the majority who do not delete fonts from a collection mistakenly: how does the design of Fontbase accommodate to show the correct number of fonts in a collection? Is there maybe some user-setting, or (context) menu item?